mirror of
https://github.com/aykhans/AzSuicideDataVisualization.git
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462 lines
17 KiB
C++
462 lines
17 KiB
C++
// Licensed to the Apache Software Foundation (ASF) under one
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// or more contributor license agreements. See the NOTICE file
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// distributed with this work for additional information
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// regarding copyright ownership. The ASF licenses this file
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// to you under the Apache License, Version 2.0 (the
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// "License"); you may not use this file except in compliance
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// with the License. You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing,
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// software distributed under the License is distributed on an
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// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
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// KIND, either express or implied. See the License for the
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// specific language governing permissions and limitations
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// under the License.
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#pragma once
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#include <algorithm>
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#include <array>
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#include <bitset>
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#include <cassert>
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#include <cstdint>
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#include <cstring>
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#include <memory>
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#include <string>
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#include <utility>
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#include "arrow/buffer.h"
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#include "arrow/util/bit_util.h"
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#include "arrow/util/bitmap_ops.h"
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#include "arrow/util/bitmap_reader.h"
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#include "arrow/util/bitmap_writer.h"
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#include "arrow/util/compare.h"
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#include "arrow/util/endian.h"
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#include "arrow/util/functional.h"
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#include "arrow/util/string_builder.h"
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#include "arrow/util/string_view.h"
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#include "arrow/util/visibility.h"
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namespace arrow {
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class BooleanArray;
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namespace internal {
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class ARROW_EXPORT Bitmap : public util::ToStringOstreamable<Bitmap>,
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public util::EqualityComparable<Bitmap> {
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public:
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template <typename Word>
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using View = util::basic_string_view<Word>;
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Bitmap() = default;
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Bitmap(std::shared_ptr<Buffer> buffer, int64_t offset, int64_t length)
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: buffer_(std::move(buffer)), offset_(offset), length_(length) {}
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Bitmap(const void* data, int64_t offset, int64_t length)
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: buffer_(std::make_shared<Buffer>(static_cast<const uint8_t*>(data),
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bit_util::BytesForBits(offset + length))),
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offset_(offset),
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length_(length) {}
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Bitmap(void* data, int64_t offset, int64_t length)
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: buffer_(std::make_shared<MutableBuffer>(static_cast<uint8_t*>(data),
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bit_util::BytesForBits(offset + length))),
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offset_(offset),
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length_(length) {}
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Bitmap Slice(int64_t offset) const {
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return Bitmap(buffer_, offset_ + offset, length_ - offset);
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}
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Bitmap Slice(int64_t offset, int64_t length) const {
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return Bitmap(buffer_, offset_ + offset, length);
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}
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std::string ToString() const;
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bool Equals(const Bitmap& other) const;
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std::string Diff(const Bitmap& other) const;
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bool GetBit(int64_t i) const { return bit_util::GetBit(buffer_->data(), i + offset_); }
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bool operator[](int64_t i) const { return GetBit(i); }
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void SetBitTo(int64_t i, bool v) const {
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bit_util::SetBitTo(buffer_->mutable_data(), i + offset_, v);
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}
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void SetBitsTo(bool v) {
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bit_util::SetBitsTo(buffer_->mutable_data(), offset_, length_, v);
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}
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void CopyFrom(const Bitmap& other);
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void CopyFromInverted(const Bitmap& other);
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/// \brief Visit bits from each bitmap as bitset<N>
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///
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/// All bitmaps must have identical length.
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template <size_t N, typename Visitor>
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static void VisitBits(const Bitmap (&bitmaps)[N], Visitor&& visitor) {
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int64_t bit_length = BitLength(bitmaps, N);
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std::bitset<N> bits;
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for (int64_t bit_i = 0; bit_i < bit_length; ++bit_i) {
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for (size_t i = 0; i < N; ++i) {
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bits[i] = bitmaps[i].GetBit(bit_i);
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}
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visitor(bits);
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}
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}
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/// \brief Visit bits from each bitmap as bitset<N>
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///
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/// All bitmaps must have identical length.
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template <size_t N, typename Visitor>
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static void VisitBits(const std::array<Bitmap, N>& bitmaps, Visitor&& visitor) {
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int64_t bit_length = BitLength(bitmaps);
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std::bitset<N> bits;
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for (int64_t bit_i = 0; bit_i < bit_length; ++bit_i) {
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for (size_t i = 0; i < N; ++i) {
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bits[i] = bitmaps[i].GetBit(bit_i);
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}
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visitor(bits);
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}
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}
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/// \brief Visit words of bits from each bitmap as array<Word, N>
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///
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/// All bitmaps must have identical length. The first bit in a visited bitmap
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/// may be offset within the first visited word, but words will otherwise contain
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/// densely packed bits loaded from the bitmap. That offset within the first word is
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/// returned.
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///
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/// TODO(bkietz) allow for early termination
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// NOTE: this function is efficient on 3+ sufficiently large bitmaps.
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// It also has a large prolog / epilog overhead and should be used
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// carefully in other cases.
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// For 2 bitmaps or less, and/or smaller bitmaps, see also VisitTwoBitBlocksVoid
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// and BitmapUInt64Reader.
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template <size_t N, typename Visitor,
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typename Word = typename std::decay<
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internal::call_traits::argument_type<0, Visitor&&>>::type::value_type>
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static int64_t VisitWords(const Bitmap (&bitmaps_arg)[N], Visitor&& visitor) {
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constexpr int64_t kBitWidth = sizeof(Word) * 8;
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// local, mutable variables which will be sliced/decremented to represent consumption:
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Bitmap bitmaps[N];
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int64_t offsets[N];
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int64_t bit_length = BitLength(bitmaps_arg, N);
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View<Word> words[N];
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for (size_t i = 0; i < N; ++i) {
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bitmaps[i] = bitmaps_arg[i];
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offsets[i] = bitmaps[i].template word_offset<Word>();
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assert(offsets[i] >= 0 && offsets[i] < kBitWidth);
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words[i] = bitmaps[i].template words<Word>();
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}
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auto consume = [&](int64_t consumed_bits) {
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for (size_t i = 0; i < N; ++i) {
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bitmaps[i] = bitmaps[i].Slice(consumed_bits, bit_length - consumed_bits);
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offsets[i] = bitmaps[i].template word_offset<Word>();
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assert(offsets[i] >= 0 && offsets[i] < kBitWidth);
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words[i] = bitmaps[i].template words<Word>();
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}
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bit_length -= consumed_bits;
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};
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std::array<Word, N> visited_words;
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visited_words.fill(0);
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if (bit_length <= kBitWidth * 2) {
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// bitmaps fit into one or two words so don't bother with optimization
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while (bit_length > 0) {
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auto leading_bits = std::min(bit_length, kBitWidth);
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SafeLoadWords(bitmaps, 0, leading_bits, false, &visited_words);
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visitor(visited_words);
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consume(leading_bits);
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}
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return 0;
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}
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int64_t max_offset = *std::max_element(offsets, offsets + N);
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int64_t min_offset = *std::min_element(offsets, offsets + N);
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if (max_offset > 0) {
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// consume leading bits
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auto leading_bits = kBitWidth - min_offset;
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SafeLoadWords(bitmaps, 0, leading_bits, true, &visited_words);
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visitor(visited_words);
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consume(leading_bits);
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}
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assert(*std::min_element(offsets, offsets + N) == 0);
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int64_t whole_word_count = bit_length / kBitWidth;
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assert(whole_word_count >= 1);
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if (min_offset == max_offset) {
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// all offsets were identical, all leading bits have been consumed
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assert(
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std::all_of(offsets, offsets + N, [](int64_t offset) { return offset == 0; }));
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for (int64_t word_i = 0; word_i < whole_word_count; ++word_i) {
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for (size_t i = 0; i < N; ++i) {
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visited_words[i] = words[i][word_i];
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}
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visitor(visited_words);
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}
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consume(whole_word_count * kBitWidth);
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} else {
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// leading bits from potentially incomplete words have been consumed
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// word_i such that words[i][word_i] and words[i][word_i + 1] are lie entirely
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// within the bitmap for all i
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for (int64_t word_i = 0; word_i < whole_word_count - 1; ++word_i) {
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for (size_t i = 0; i < N; ++i) {
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if (offsets[i] == 0) {
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visited_words[i] = words[i][word_i];
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} else {
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auto words0 = bit_util::ToLittleEndian(words[i][word_i]);
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auto words1 = bit_util::ToLittleEndian(words[i][word_i + 1]);
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visited_words[i] = bit_util::FromLittleEndian(
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(words0 >> offsets[i]) | (words1 << (kBitWidth - offsets[i])));
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}
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}
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visitor(visited_words);
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}
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consume((whole_word_count - 1) * kBitWidth);
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SafeLoadWords(bitmaps, 0, kBitWidth, false, &visited_words);
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visitor(visited_words);
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consume(kBitWidth);
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}
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// load remaining bits
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if (bit_length > 0) {
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SafeLoadWords(bitmaps, 0, bit_length, false, &visited_words);
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visitor(visited_words);
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}
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return min_offset;
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}
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template <size_t N, size_t M, typename ReaderT, typename WriterT, typename Visitor,
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typename Word = typename std::decay<
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internal::call_traits::argument_type<0, Visitor&&>>::type::value_type>
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static void RunVisitWordsAndWriteLoop(int64_t bit_length,
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std::array<ReaderT, N>& readers,
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std::array<WriterT, M>& writers,
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Visitor&& visitor) {
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constexpr int64_t kBitWidth = sizeof(Word) * 8;
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std::array<Word, N> visited_words;
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std::array<Word, M> output_words;
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// every reader will have same number of words, since they are same length'ed
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// TODO($JIRA) this will be inefficient in some cases. When there are offsets beyond
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// Word boundary, every Word would have to be created from 2 adjoining Words
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auto n_words = readers[0].words();
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bit_length -= n_words * kBitWidth;
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while (n_words--) {
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// first collect all words to visited_words array
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for (size_t i = 0; i < N; i++) {
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visited_words[i] = readers[i].NextWord();
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}
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visitor(visited_words, &output_words);
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for (size_t i = 0; i < M; i++) {
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writers[i].PutNextWord(output_words[i]);
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}
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}
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// every reader will have same number of trailing bytes, because of the above reason
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// tailing portion could be more than one word! (ref: BitmapWordReader constructor)
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// remaining full/ partial words to write
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if (bit_length) {
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// convert the word visitor lambda to a byte_visitor
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auto byte_visitor = [&](const std::array<uint8_t, N>& in,
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std::array<uint8_t, M>* out) {
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std::array<Word, N> in_words;
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std::array<Word, M> out_words;
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std::copy(in.begin(), in.end(), in_words.begin());
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visitor(in_words, &out_words);
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for (size_t i = 0; i < M; i++) {
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out->at(i) = static_cast<uint8_t>(out_words[i]);
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}
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};
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std::array<uint8_t, N> visited_bytes;
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std::array<uint8_t, M> output_bytes;
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int n_bytes = readers[0].trailing_bytes();
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while (n_bytes--) {
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visited_bytes.fill(0);
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output_bytes.fill(0);
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int valid_bits;
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for (size_t i = 0; i < N; i++) {
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visited_bytes[i] = readers[i].NextTrailingByte(valid_bits);
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}
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byte_visitor(visited_bytes, &output_bytes);
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for (size_t i = 0; i < M; i++) {
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writers[i].PutNextTrailingByte(output_bytes[i], valid_bits);
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}
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}
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}
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}
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/// \brief Visit words of bits from each input bitmap as array<Word, N> and collects
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/// outputs to an array<Word, M>, to be written into the output bitmaps accordingly.
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///
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/// All bitmaps must have identical length. The first bit in a visited bitmap
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/// may be offset within the first visited word, but words will otherwise contain
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/// densely packed bits loaded from the bitmap. That offset within the first word is
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/// returned.
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/// Visitor is expected to have the following signature
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/// [](const std::array<Word, N>& in_words, std::array<Word, M>* out_words){...}
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///
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// NOTE: this function is efficient on 3+ sufficiently large bitmaps.
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// It also has a large prolog / epilog overhead and should be used
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// carefully in other cases.
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// For 2 bitmaps or less, and/or smaller bitmaps, see also VisitTwoBitBlocksVoid
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// and BitmapUInt64Reader.
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template <size_t N, size_t M, typename Visitor,
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typename Word = typename std::decay<
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internal::call_traits::argument_type<0, Visitor&&>>::type::value_type>
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static void VisitWordsAndWrite(const std::array<Bitmap, N>& bitmaps_arg,
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std::array<Bitmap, M>* out_bitmaps_arg,
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Visitor&& visitor) {
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int64_t bit_length = BitLength(bitmaps_arg);
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assert(bit_length == BitLength(*out_bitmaps_arg));
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// if both input and output bitmaps have no byte offset, then use special template
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if (std::all_of(bitmaps_arg.begin(), bitmaps_arg.end(),
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[](const Bitmap& b) { return b.offset_ % 8 == 0; }) &&
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std::all_of(out_bitmaps_arg->begin(), out_bitmaps_arg->end(),
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[](const Bitmap& b) { return b.offset_ % 8 == 0; })) {
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std::array<BitmapWordReader<Word, /*may_have_byte_offset=*/false>, N> readers;
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for (size_t i = 0; i < N; ++i) {
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const Bitmap& in_bitmap = bitmaps_arg[i];
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readers[i] = BitmapWordReader<Word, /*may_have_byte_offset=*/false>(
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in_bitmap.buffer_->data(), in_bitmap.offset_, in_bitmap.length_);
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}
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std::array<BitmapWordWriter<Word, /*may_have_byte_offset=*/false>, M> writers;
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for (size_t i = 0; i < M; ++i) {
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const Bitmap& out_bitmap = out_bitmaps_arg->at(i);
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writers[i] = BitmapWordWriter<Word, /*may_have_byte_offset=*/false>(
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out_bitmap.buffer_->mutable_data(), out_bitmap.offset_, out_bitmap.length_);
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}
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RunVisitWordsAndWriteLoop(bit_length, readers, writers, visitor);
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} else {
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std::array<BitmapWordReader<Word>, N> readers;
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for (size_t i = 0; i < N; ++i) {
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const Bitmap& in_bitmap = bitmaps_arg[i];
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readers[i] = BitmapWordReader<Word>(in_bitmap.buffer_->data(), in_bitmap.offset_,
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in_bitmap.length_);
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}
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std::array<BitmapWordWriter<Word>, M> writers;
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for (size_t i = 0; i < M; ++i) {
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const Bitmap& out_bitmap = out_bitmaps_arg->at(i);
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writers[i] = BitmapWordWriter<Word>(out_bitmap.buffer_->mutable_data(),
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out_bitmap.offset_, out_bitmap.length_);
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}
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RunVisitWordsAndWriteLoop(bit_length, readers, writers, visitor);
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}
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}
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const std::shared_ptr<Buffer>& buffer() const { return buffer_; }
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/// offset of first bit relative to buffer().data()
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int64_t offset() const { return offset_; }
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/// number of bits in this Bitmap
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int64_t length() const { return length_; }
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/// string_view of all bytes which contain any bit in this Bitmap
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util::bytes_view bytes() const {
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auto byte_offset = offset_ / 8;
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auto byte_count = bit_util::CeilDiv(offset_ + length_, 8) - byte_offset;
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return util::bytes_view(buffer_->data() + byte_offset, byte_count);
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}
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private:
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/// string_view of all Words which contain any bit in this Bitmap
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///
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/// For example, given Word=uint16_t and a bitmap spanning bits [20, 36)
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/// words() would span bits [16, 48).
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///
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/// 0 16 32 48 64
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/// |-------|-------|------|------| (buffer)
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/// [ ] (bitmap)
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/// |-------|------| (returned words)
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///
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/// \warning The words may contain bytes which lie outside the buffer or are
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/// uninitialized.
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template <typename Word>
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View<Word> words() const {
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auto bytes_addr = reinterpret_cast<intptr_t>(bytes().data());
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auto words_addr = bytes_addr - bytes_addr % sizeof(Word);
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auto word_byte_count =
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bit_util::RoundUpToPowerOf2(static_cast<int64_t>(bytes_addr + bytes().size()),
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static_cast<int64_t>(sizeof(Word))) -
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words_addr;
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return View<Word>(reinterpret_cast<const Word*>(words_addr),
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word_byte_count / sizeof(Word));
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}
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/// offset of first bit relative to words<Word>().data()
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template <typename Word>
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int64_t word_offset() const {
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return offset_ + 8 * (reinterpret_cast<intptr_t>(buffer_->data()) -
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reinterpret_cast<intptr_t>(words<Word>().data()));
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}
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/// load words from bitmaps bitwise
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template <size_t N, typename Word>
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static void SafeLoadWords(const Bitmap (&bitmaps)[N], int64_t offset,
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int64_t out_length, bool set_trailing_bits,
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std::array<Word, N>* out) {
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out->fill(0);
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int64_t out_offset = set_trailing_bits ? sizeof(Word) * 8 - out_length : 0;
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Bitmap slices[N], out_bitmaps[N];
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for (size_t i = 0; i < N; ++i) {
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slices[i] = bitmaps[i].Slice(offset, out_length);
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out_bitmaps[i] = Bitmap(&out->at(i), out_offset, out_length);
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}
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int64_t bit_i = 0;
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Bitmap::VisitBits(slices, [&](std::bitset<N> bits) {
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for (size_t i = 0; i < N; ++i) {
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out_bitmaps[i].SetBitTo(bit_i, bits[i]);
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}
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++bit_i;
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});
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}
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std::shared_ptr<BooleanArray> ToArray() const;
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/// assert bitmaps have identical length and return that length
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static int64_t BitLength(const Bitmap* bitmaps, size_t N);
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template <size_t N>
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static int64_t BitLength(const std::array<Bitmap, N>& bitmaps) {
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for (size_t i = 1; i < N; ++i) {
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assert(bitmaps[i].length() == bitmaps[0].length());
|
|
}
|
|
return bitmaps[0].length();
|
|
}
|
|
|
|
std::shared_ptr<Buffer> buffer_;
|
|
int64_t offset_ = 0, length_ = 0;
|
|
};
|
|
|
|
} // namespace internal
|
|
} // namespace arrow
|